Thursday, October 23, 2008

Improving our ability to peek inside molecules

parallel holography at high resolutions

Massively parallel holography at high resolutions.
a) A lithographic test sample imaged by scanning electron microscopy (SEM) next to a 30-nm-thick twin-prime 71 x 73 array with 44-nm square gold scattering elements. The scale bar is 2 mm. b) The diffraction pattern collected at the ALS (1 x 10 6 photons in a five second exposure, 200 mm from the sample). c) The real part of the reconstructed hologram. d) The simulation with 1 x 10 6 photons. The grey scale represents the real part of the hologram. e) A simulation with the same number of photons, but a single reference pinhole. f) Line through the two dots indicated in image c.

LIVERMORE -- It's not easy to see a single molecule inside a living cell.

Nevertheless, researchers at Lawrence Livermore National Laboratory are helping to develop a new technique that will enable them to create detailed high-resolution images, giving scientists an unprecedented look at the atomic structure of cellular molecules.

The LLNL team is collaborating with scientists across the country and in Germany and Sweden to utilize high-energy X-ray beams, combined with complex algorithms, to overcome difficulties in current technology.
The work began more than five years ago as a Laboratory Directed Research and Development (LDRD) project, headed by Stefano Marchesini. He has since transferred to Lawrence Berkeley Lab (LBNL), leaving the project in the hands of Stefan Hau-Riege, a materials science physicist at LLNL.

For now, the Advanced Light Source at LBNL and the FLASH facility in Hamburg, Germany, are being used to provide the X-ray beams. But a new facility under construction at Stanford University, the Linac Coherent Light Source (LCLS), will provide additional capabilities and greater imaging accuracy when it comes on line next year.

Another light source being built in Hamburg will be used as well. When completed in late 2013, the X-ray Free Electron Laser (XFEL) will be the world's longest artificial light source.
Experimental geometry and imaging

Experimental geometry and imaging, A coherent X-ray beam illuminates both the sample and a Uniformly Redundant Array (URA) placed next to it. An area detector (a charged-coupled device, CCD, in these experiments) collects the diffracted X-rays. The Fourier Transform of the diffraction pattern yields the autocorrelation map with a holographic term (in the circle) displaced from the centre. The Hadamard Transform decodes the hologram.

Using high-energy, extremely short-pulse - less than 100 femtoseconds, or one quadrillionth of a second - X-ray beams to examine nanoscale objects is not a new concept. The difficulty lies with the algorithms to convert the resulting patterns into usable images.

One method to increase the signal and resolution of the image is to include a second item with known features during the laser imaging. Known as a "reference object," it gives the researchers additional information with which to process the imaging data.

What is new is to use a very special reference object called a "uniformly redundant array" (URA). In this case, a combination of complex formulas known as a "Fourier Transform" and a "Hadamard Transform" are utilized to convert the data into an image that represents the object being examined. Hadamard transforms are commonly used in signal processing and data algorithms, including those used in photo and video compression.

According to Hau-Riege, "The resolution we achieved is among the best ever reported for holography of a micrometer-sized object, and we believe that it will improve in the future with the development of nano-arrays for Fourier Transform Holography at LCLS." ###

Other contributors to the findings include: Anton Barty, Matthias Frank, and Abraham Szöke, all from LLNL; researchers from LBNL; UC-Berkeley; Stanford University; Sweden's Uppsala University; the Centre for Free-Electron Laser Science at DESY in Hamburg, Germany; Arizona State University; and Princeton University.

Details of the study appear in the August 1 edition of the journal Nature Photonics.

Founded in 1952, Lawrence Livermore National Laboratory ( is a national security laboratory, with a mission to ensure national security and apply science and technology to the important issues of our time. Lawrence Livermore National Laboratory is managed by Lawrence Livermore National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration.

Contact: Bob Hirschfeld 925-422-2379 DOE/Lawrence Livermore National Laboratory

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